Click Revision Log (top right) Pour through the revisions until you find the version you're looking for. This is the link for subversion, which is the package I'll be using in the example. While you can run most of the MacPort commands without Xcode, you won’t be able to run many of the packages until you install it. Go to macports trac and find the package you're looking for. You can download Xcode from the Mac App Store or Apple’s developer website. MacPorts requires the latest version of Xcode for your OS version. You can also use MacPorts to install open-source software like GIMP. Mac users won’t find common command-line tools like nmap or wget, and there’s no native package manager on the Mac to provide them. to determine the version number of the old version you want to re-activate, and run sudo port activate portname old-version. If you read our post on Homebrew, you know that macOS is missing some “standard” Linux terminal commands out of the box. This allows you to go back to the older version if there happens to be a problem with the updated one. This saves you the trouble of downloading repositories from GitHub and building software from source packages while still getting access to a wide range of Linux’s best command-line tools and GUI applications. When you find what you need, MacPorts downloads and installs the appropriate software and dependencies in the right place. Like any package manager, MacPorts searches a library of downloadable software. pymolrc file and his crystallographic software wiki and website, including instructions on how to install precompiled binary packages using fink.Most of these applications are open-source, command-line utilities, but there are a fair share of “real” open-source, GUI-based applications. FreeMOL installation for MPEG movie export.You can also set up an alias in your ~/.profile: If this happens to you, a workaround is to launch PyMOL explicitly in Mono mode with `pymol -M`. Some older Macs seem to crash with stereo graphics. The fink pymol package is already preconfigured to do the right thing to use apbs as a plugin. Will install apbs and its required dependencies for you. If you have multiple processors available, you might wish to install the MPI version of APBS. These are also available as Fink packages, and include APBS, maloc and pdb2pqr. To use the electrostatics plugin, you will need APBS and its dependencies. That way the OpenGL context will be created with stereo support. The trick to getting MacPyMOL to work in stereo on the second monitor is to force it to initially open on that display by providing an appropriate "-X #" (and perhaps -Y #) option on launch. Launch the unix executable with the -m flag: /Applications/MacPyMOL.app/Contents/MacOS/MacPyMOL -m.Rename or copy/duplicate /Applications/MacPyMOL.app to /Applications/MacPyMOLX11Hybrid.app or to /Applications/PyMOLX11Hybrid.app.There are two ways to launch the X11 interface: This GUI has some additional features, like the Plugin menu and the Builder. MacPyMOL can optionally run with the same two-window GUI which PyMOL uses on Windows and Linux. The unix executable resides at /Applications/PyMOL.app/Contents/MacOS/PyMOL X11 Hybrid Uninstallation: Move /Applications/PyMOL.app to Trash (In principle, you could drag it into any Finder window and run it from there, it doesn’t have to live in /Applications). Installation: Drag PyMOL.app on the /Applications shortcut. The bundle also includes ready-to-use APBS, RigiMOL, an MPEG encoder for movie export, and a small molecule energy minimization engine. Schrödinger provides pre-compiled PyMOL to paying sponsors.
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